Why CIS subcontractors overpay tax, how to work out your refund, and how to get it back faster. Worked example, expenses list and realistic timescales.
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Clear accounting and IR35 support with straightforward monthly pricing from £95.00 per month
Complete company accounts, tax, and ongoing support with fixed monthly pricing from £95.00 per month
Simple accounting and tax support to keep your records organised from £40.00 per month
CIS tax returns handled accurately and submitted on time from £270 per month
Rental income tracking and tax reporting with clear monthly support from £33.00 per month
Start your business with free company formation and ongoing accounting support
Stay compliant with Making Tax Digital and avoid last-minute issues with clear, ongoing support
Get your self assessment tax return completed accurately and on time without the usual stress
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October 14, 2026
Aksons
Quick Summary: Payments on account are the single most common cause of a January tax shock, because the first bill arrives at roughly 150% of the figure people have budgeted for. This guide covers what actually determines your position: the two tests that decide whether you have to make them at all, which taxes are included in the calculation and which are excluded entirely, why the inflated bill only happens once and what the cycle looks like in years two and three, the three ways to claim a reduction and the deadline that applies, the grounds HMRC accepts versus the ones it rejects, and why reducing a payment to solve a cash flow problem is usually the wrong tool and an expensive one.
A sole trader finishes their first full year, works out they owe £3,000, puts £3,000 aside, and logs in to find HMRC wants £4,500.
Nothing has gone wrong. The extra £1,500 is the first payment on account towards the following tax year, and a second £1,500 follows on 31 July. In that twelve-month window they will pay £6,000 against a £3,000 liability.
The system is not charging twice. It is moving a year’s worth of tax from arrears to instalments, and the transition year carries both. Once you understand that, the number stops being alarming and becomes something you can plan for. Until you understand it, it arrives in the last week of January as a problem you have no money for.
The second thing worth knowing straight away is that the inflated bill is a one-off. From the following year the cycle settles into two instalments a year, with the balancing payment usually small or nil. The shock belongs to the first year only.
| Date | What falls due |
| 31 January | Balancing payment for the tax year just ended, plus the first payment on account for the current year |
| 31 July | Second payment on account for the current year |
Two tests decide it, and you have to fail both to be caught.
| Test | You are exempt if… |
| The £1,000 test | Your relevant amount for the previous year was under £1,000 |
| The 80% test | 80% or more of your tax for that year was already collected at source |
The 80% test is the one that catches people out in both directions. An employed person with a modest side business usually clears it, because PAYE already covers most of their tax, so no payments on account arise however large the overall bill. A sole trader with no PAYE income almost never clears it, so a liability of £1,001 is enough to trigger the instalments.
Note that the test is applied to the previous year. Your position can change from one year to the next as your income mix changes.
These are charged under Schedule 55 of the Finance Act 2009 and apply automatically, whether or not you owe any tax.
| How late | Penalty | Running total |
| 1 day | £100 fixed | £100 |
| 3 months | £10 per day for up to 90 days | Up to £1,000 |
| 6 months | The greater of £300 or 5% of the tax due | Up to £1,300+ |
| 12 months | A further £300 or 5%, whichever is greater | Up to £1,600+ |
Where HMRC finds the failure was deliberate and concealed, the 12-month charge can rise to as much as 100% of the tax due.
There is no tolerance period and no discretion built into the system. The £100 is applied automatically on 1 February.
This is the detail most guides skip, and it is where people miscalculate what they owe.
| In the calculation | Excluded from the calculation |
| Income tax on self-employment profits | Capital Gains Tax |
| Income tax on rental profits | Student loan repayments |
| Income tax on dividends and savings income | Postgraduate loan repayments |
| Class 4 National Insurance | Class 2 National Insurance |
Everything in the right-hand column is payable in full as part of the 31 January balancing payment. None of it is spread across instalments.
That matters most for landlords who sold a property and for anyone still repaying a student loan. A landlord with a capital gain can face a January bill containing the balancing payment, the entire Capital Gains Tax charge, and the first payment on account, all on the same day. The payments on account element gives no relief against the gain at all.
A note on Class 2: the liability to pay it was removed from the 2024/25 tax year onwards, though voluntary contributions remain available for those with profits below the Small Profits Threshold.
Take a sole trader whose income tax and Class 4 National Insurance comes to £3,000 a year, steadily, with no tax collected at source.
| Date | What is due | Amount |
| 31 Jan, year 1 | Balancing payment for year 1 (£3,000) plus first instalment for year 2 (£1,500) | £4,500 |
| 31 Jul, year 1 | Second instalment for year 2 | £1,500 |
| 31 Jan, year 2 | Balancing payment for year 2 (£3,000 less £3,000 already paid on account) plus first instalment for year 3 | £1,500 |
| 31 Jul, year 2 | Second instalment for year 3 | £1,500 |
| 31 Jan, year 3 | Balancing payment plus first instalment | £1,500 |
The pattern is clear. One painful January, then two predictable payments a year. Over the full period the trader pays exactly £3,000 a year, the timing moves, not the amount.
Where it stops being predictable is when income changes. If year two’s liability rises to £4,000, the January bill becomes the £1,000 shortfall plus a £2,000 instalment. If it falls to £2,000, the £3,000 already paid on account produces a £1,000 refund.
You can claim a reduction when you genuinely expect the coming year’s liability to be lower. There are three routes and they all reach the same place.
On your tax return: The Self Assessment tax calculation summary includes a box specifically for this: tick it, and enter the reduced amount of each payment on account. This is the easiest route because you are already filing.
Through your HMRC online account: Sign in to your Self Assessment account and select the option to reduce payments on account.
By post on form SA303: The paper claim, for those not filing online.
Two rules govern the claim.
The deadline is 31 January following the tax year the payments relate to. A claim to reduce the 2026/27 payments on account must be made before 31 January 2028.
There is no limit on the number of claims. If circumstances change again, you can revise it. You can also reduce the payments to nil where you expect no liability at all.
Where you have already overpaid an instalment, HMRC can refund the excess, provided the next payment is not due within 30 days.
A claim must rest on a genuine expectation that the liability will be lower. It is a statement about next year’s tax, not a request for more time.
| HMRC generally accepts | HMRC generally rejects |
| You have ceased trading | You cannot afford the payment |
| You lost a major client or contract | You would prefer to pay later |
| You sold the rental property producing the income | You are hoping income will fall |
| Last year included one-off income that will not repeat | Your accountant said it was worth a try |
| You have moved to employment, so PAYE now covers more | You want to keep the cash in the business |
| You are making a large pension contribution | — |
| A substantial capital allowances claim is coming | — |
| You have reduced your hours or scaled the business back | — |
The left-hand column shares one feature: something concrete has changed, and you could explain it in a sentence if asked. The right-hand column describes a cash flow problem, which is a real problem with a different solution.
This is the part that is easy to overlook, because nothing happens at the time. HMRC accepts the reduced figure without argument and the lower amount is collected.
The reckoning comes when you file the return. If your actual liability turns out higher than the reduced instalments, HMRC charges late payment interest on the shortfall, backdated to the original 31 January and 31 July due dates. You are treated as having paid late all along.
Working example: Your payments on account were set at £2,500 each. You reduced both to £1,000. Your actual liability comes in at £4,800.
| Amount | |
| January instalment shortfall | £1,500 |
| July instalment shortfall | £1,500 |
| Interest on the January shortfall, backdated 12 months at 7.75% | approx. £116 |
| Interest on the July shortfall, backdated 6 months at 7.75% | approx. £59 |
| Interest cost of the reduction | approx. £175 |
The £3,000 was always going to be payable. The £175 was avoidable.
Where HMRC concludes a claim was made fraudulently or negligently, a penalty can follow on top. A reduction supported by a real change in circumstances will not attract one. A reduction made because the money was not there might.
These get confused constantly, and picking the wrong one costs money.
Use a claim to reduce when you expect to owe less. The liability itself is genuinely falling.
Use Time to Pay when you expect to owe the same but cannot pay it on the due date. A Time to Pay arrangement can be set up online for Self Assessment debt up to £30,000, spread over up to 12 months, provided your returns are up to date and you apply within 60 days of the payment deadline.
Both carry interest. Only one carries the risk of a penalty for an unfounded claim. If the issue is cash rather than income, Time to Pay is the correct instrument and it is designed for exactly that situation.
They are not permanent. The requirement falls away for a tax year whenever your final liability for that year comes in below £1,000, or 80% or more of your tax is collected at source.
In practice that means payments on account stop when you cease trading, when you move to employment and PAYE picks up most of your tax, or when your profits fall below the threshold. Anything you have already paid on account that exceeds the final liability is either refunded or set against the next amount due.
If you have stopped trading, make the claim rather than waiting for the system to notice. HMRC works from the last return it holds, so the instalments will keep being demanded until you tell it otherwise.
Payments on account do not increase anyone’s tax. They move its timing, and the whole of the difficulty sits in the first year, when one January bill carries a full year in arrears and half a year in advance at the same time. Understood in October, it is a number to plan for. Discovered on 30 January, it is a crisis.
Two habits remove the problem entirely. Set aside a fixed percentage of every payment you receive, so the money exists before the deadline does. And if your income has genuinely fallen, claim the reduction properly when you file rather than paying installments based on a year that no longer reflects your business, while remembering that cutting them below what you will actually owe just buys an interest charge.
At Aksons Accounting we calculate payments on account as part of every Self Assessment return we prepare, and we tell clients what January and July will cost well before either arrives. If you are facing a January bill larger than you expected, or you think your instalments are based on a year that is no longer representative, send us your figures and we will work out whether a reduction claim is justified.
Why CIS subcontractors overpay tax, how to work out your refund, and how to get it back faster. Worked example, expenses list and realistic timescales.
Why CIS subcontractors overpay tax, how to work out your refund, and how to get it back faster. Worked example, expenses list and realistic timescales.
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